Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_43618_62418_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43618 - 62418

Intron Length:

18801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTACCATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TGCTTCTTACCA

Flanking Amino Acid:

VRDEWKSPNTKFITRLHEVV

Intron Amino Acid Position:

402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.8

85.9

23.8

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

0.61

0.9

69.5

35.4

Minor 5ss

33.7

-1.9

2.8

42.6

38.4

Minor BPS

64.1

0.44

1.6

71.26

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003903

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046376

43241 - 79050

35810