About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4362057_4362653_F

Intron Information:

Intron Rank:
127978
Intron Class:
major
Intron Phase:
Intron Coordinates:
4362057 - 4362653
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCTAG
U12 Branch Point Sequence:
CTGCTCCTAGCG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
43.1
-0.4
1.6
41.8
41
Major PPT
81
0.7
0.8
73.9
36.8
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
44.4
-0.5
1.9
48.96
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018960
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039654
4361319 - 4384543
23225