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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4365177_4384375_F

Intron Information:

Intron Rank:
127980
Intron Class:
major
Intron Phase:
Intron Coordinates:
4365177 - 4384375
Intron Length:
19199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGCAA
5'SS Class:
major
3'SS Sequence:
TCTAATTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATCCAAAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
57.9
42.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.4
0.66
0.8
77.2
36.6
Minor 5ss
25
-2.9
3.2
29.6
43.3
Minor BPS
51.5
0.03
2
69.87
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018960
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047304
4361319 - 4384543
23225
ENSAPLT00000039654
4361319 - 4384543
23225