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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_442427_443206_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
442427 - 443206
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CTGTCCCCAACC
Flanking Amino Acid:
NPTAESGEQPVNDAQSLVTQ
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
32.5
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
43.3
-0.7
2.8
60.6
43.7
Minor BPS
54
0.1
2
67.41
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006375
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026127
441661 - 452404
10744
ENSAPLT00000006608
441661 - 452404
10744