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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_446403_446774_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
446403 - 446774
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGC
5'SS Class:
strong_major
3'SS Sequence:
TCGTGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGGCTTCTCACT
Flanking Amino Acid:
NCMPGQELSKECGDGTGGDA
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75.6
35.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.2
0.66
0.9
72.9
37.4
Minor 5ss
39.9
-1.1
2.9
53
44.2
Minor BPS
44.3
-0.3
2
62.09
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006375
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026127
441661 - 452404
10744
ENSAPLT00000006608
441661 - 452404
10744