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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4472538_4588904_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4472538 - 4588904
Intron Length:
116367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
KTPGPIHTRQIIWVGQSGYS
Intron Amino Acid Position:
1074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.7
0.85
0.8
85.4
27.8
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006804
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032312
4396147 - 4623782
227636