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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4589027_4623710_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
4589027 - 4623710
Intron Length:
34684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
TCTCTCCTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TCTCTCCTAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
66.7
38.7
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
77.9
0.63
0.8
73.4
30.1
Minor 5ss
40.7
-1
2.8
49.5
41.3
Minor BPS
62.1
0.38
1.7
73.2
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006804
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032312
4396147 - 4623782
227636