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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4623783_4703340_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4623783 - 4703340
Intron Length:
79558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
TTCTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTCTTTTTAATA
Flanking Amino Acid:
ATLEPWTQPQSELTLSFFTI
Intron Amino Acid Position:
1050

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.6
46.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.5
0.73
0.8
80.9
29.7
Minor 5ss
41.9
-0.9
3.2
55.4
48.8
Minor BPS
75.4
0.79
1.1
78
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006804
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036140
4446973 - 4704389
257417