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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4623783_4747290_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4623783 - 4747290
Intron Length:
123508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
TCCTTCCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AACCATATAATT
Flanking Amino Acid:
ATLEPWTQPQPQRRVTFHLP
Intron Amino Acid Position:
1098

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.6
46.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
81.5
0.71
0.7
77
25
Minor 5ss
41.9
-0.9
3.2
55.4
48.8
Minor BPS
45.8
-0.2
1.7
59.04
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006804
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030087
4396147 - 4880928
484782
ENSAPLT00000022678
4446973 - 4875786
428814
ENSAPLT00000038283
4396147 - 4753066
356920
ENSAPLT00000022435
4396147 - 4875786
479640
ENSAPLT00000037486
4437615 - 4756371
318757
ENSAPLT00000031319
4396147 - 4818515
422369