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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_473451_476704_R

Intron Information:

Intron Rank:
137535
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
473451 - 476704
Intron Length:
3254

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
TAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCCCGCTAAAAGG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCGTGCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
32.9
-0.9
3.1
44.7
34.6
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
49.4
-0
2.6
75.11
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021479
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029768
472415 - 477246
4832