About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4747490_4756192_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4747490 - 4756192
Intron Length:
8703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
ATCTTGTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
AATCCCTTATCT
Flanking Amino Acid:
EGDGNSDPESMFENDKCEDL
Intron Amino Acid Position:
1116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
62.4
0.31
1
64
32.1
Major PPT
74.9
0.56
0.9
68.6
36.7
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
68.5
0.66
1.6
81.69
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006804
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037486
4437615 - 4756371
318757