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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4964363_4980365_R

Intron Information:

Intron Rank:
140260
Intron Class:
major
Intron Phase:
Intron Coordinates:
4964363 - 4980365
Intron Length:
16003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACTA
5'SS Class:
major
3'SS Sequence:
TTTTCCTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
AGAGTGATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
67.8
39.3
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
79.9
0.67
0.8
73.8
36.8
Minor 5ss
28.7
-2.4
3.3
38.1
46.8
Minor BPS
40.2
-0.7
2.1
46.61
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022830
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034707
4963463 - 4981234
17772