Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_497054_511739_R

Intron Information:

Intron Rank:

143921

Intron Class:

major

Intron Phase:

Intron Coordinates:

497054 - 511739

Intron Length:

14686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCTTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TGCCCTTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

79.3

31.1

Major BPS

73.1

0.58

79.6

29.1

Major PPT

78.5

0.64

0.9

72.3

37.9

Minor 5ss

28.2

-2.5

2.8

32.2

42.5

Minor BPS

62.4

0.38

1.4

66.89

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024712

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032591

496888 - 513065

16178