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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5048271_5050104_R

Intron Information:

Intron Rank:
134906
Intron Class:
major
Intron Phase:
Intron Coordinates:
5048271 - 5050104
Intron Length:
1834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTCTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
73.4
0.53
0.9
67.7
38.6
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
68.7
0.67
1.5
87.78
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019935
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031664
5048105 - 5065027
16923