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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5050224_5064962_R

Intron Information:

Intron Rank:
134907
Intron Class:
major
Intron Phase:
Intron Coordinates:
5050224 - 5064962
Intron Length:
14739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTTTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77
28.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.1
0.75
0.9
77
36.7
Minor 5ss
30.6
-2.2
3.2
37.1
47.5
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019935
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031664
5048105 - 5065027
16923