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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5118094_5262647_R

Intron Information:

Intron Rank:
152022
Intron Class:
major
Intron Phase:
Intron Coordinates:
5118094 - 5262647
Intron Length:
144554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
ATGTTATTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
86.3
0.82
0.7
81
24.1
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
50.9
0.11
1.8
70.68
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029361
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020947
5118029 - 5263210
145182