Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5260412_5262647_R

Intron Information:

Intron Rank:

152024

Intron Class:

major

Intron Phase:

Intron Coordinates:

5260412 - 5262647

Intron Length:

2236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

AAATATTTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

AAATATTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

78.6

28.8

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

65.3

0.35

1.1

59.2

44.9

Minor 5ss

34.7

-1.7

3.2

43.7

38.1

Minor BPS

64.8

0.46

1.4

69.23

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038764

5260029 - 5264700

4672

ENSAPLT00000029197

5260029 - 5263210

3182