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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5262709_5263819_R

Intron Information:

Intron Rank:
152027
Intron Class:
major
Intron Phase:
Intron Coordinates:
5262709 - 5263819
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TACTTTGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
70
0.5
1
67
39.8
Major PPT
85.5
0.8
0.8
79.9
32.2
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
47
-0.1
2.2
67.74
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029361
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038764
5260029 - 5264700
4672