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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5263992_5264319_R

Intron Information:

Intron Rank:
152028
Intron Class:
major
Intron Phase:
Intron Coordinates:
5263992 - 5264319
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTAGTTGCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
36.4
-1.1
2
37.61
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029361
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038764
5260029 - 5264700
4672