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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5324508_5324713_R

Intron Information:

Intron Rank:
133272
Intron Class:
major
Intron Phase:
Intron Coordinates:
5324508 - 5324713
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AGTTTTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83
0.74
0.8
77.3
31.5
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
66.8
0.6
1.4
79.71
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018942
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018098
5324432 - 5351283
26852