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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5324821_5325753_R

Intron Information:

Intron Rank:
133273
Intron Class:
major
Intron Phase:
Intron Coordinates:
5324821 - 5325753
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTGCCTTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
45.9
-0.3
2
55.45
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018942
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018098
5324432 - 5351283
26852