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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5343327_5344998_R

Intron Information:

Intron Rank:
133275
Intron Class:
major
Intron Phase:
Intron Coordinates:
5343327 - 5344998
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TCTACTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATAAT
U12 Branch Point Sequence:
TCTTTCTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
62.9
0.32
1.2
63.9
38.4
Major PPT
78.5
0.64
0.9
71.8
38
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
59.6
0.38
1.9
79.84
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018942
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046756
5343149 - 5345385
2237
ENSAPLT00000018631
5343299 - 5351283
7985