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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5343327_5351099_R

Intron Information:

Intron Rank:
133278
Intron Class:
major
Intron Phase:
Intron Coordinates:
5343327 - 5351099
Intron Length:
7773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTACTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATAAT
U12 Branch Point Sequence:
TCTTTCTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
62.9
0.32
1.2
63.9
38.4
Major PPT
78.5
0.64
0.9
71.8
38
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
59.6
0.38
1.9
79.84
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018942
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035731
5340936 - 5351283
10348