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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5389131_5393292_R

Intron Information:

Intron Rank:
151852
Intron Class:
major
Intron Phase:
Intron Coordinates:
5389131 - 5393292
Intron Length:
4162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTCT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
ACTCCTTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
68.2
37.3
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
84
0.76
0.7
77.2
31.6
Minor 5ss
38.9
-1.3
3.4
53.4
45.7
Minor BPS
59.8
0.29
1.5
66.51
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029246
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017669
5387185 - 5393492
6308