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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5511410_5526368_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5511410 - 5526368
Intron Length:
14959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTTTTTAATA
Flanking Amino Acid:
EEESRNKPKLNIQIKTLADD
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
82.9
0.74
0.8
81
29.6
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
75.3
0.79
1.1
78
33.3

Associated Gene:

Gene:
DIAPH2
Ensembl Gene ID:
ENSAPLG00000003882
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046828
5511287 - 5601134
89848
ENSAPLT00000034199
5511287 - 5601134
89848