Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5534950_5540666_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5534950 - 5540666

Intron Length:

5717

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTGTGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTATAT

U12 Branch Point Sequence:

TCTTCTGTGATA

Flanking Amino Acid:

AKSIVGSKVPGGLKNSKHEC

Intron Amino Acid Position:

143

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

78.2

37.9

Major BPS

66.7

0.41

1.1

63.2

42.8

Major PPT

0.47

68.3

37.5

Minor 5ss

34.4

-1.8

2.8

43.3

43.8

Minor BPS

54.5

0.14

69.19

38.1

Associated Gene:

Gene:

DIAPH2

Ensembl Gene ID:

ENSAPLG00000003882

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004091

5511287 - 5601134

89848

ENSAPLT00000046828

5511287 - 5601134

89848