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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5558617_5576391_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5558617 - 5576391
Intron Length:
17775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ACATTCTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTTAATAAAT
Flanking Amino Acid:
LAITFGTQVKAKKAIEETEE
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.4
0.66
0.9
72.7
36.8
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
48.8
-0
1.9
71.35
38.5

Associated Gene:

Gene:
DIAPH2
Ensembl Gene ID:
ENSAPLG00000003882
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046828
5511287 - 5601134
89848
ENSAPLT00000034199
5511287 - 5601134
89848
ENSAPLT00000004091
5511287 - 5601134
89848