Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5576494_5577954_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5576494 - 5577954

Intron Length:

1461

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TACTGAATTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TCTTACTGAATT

Flanking Amino Acid:

VLDGKTAQNLSIFLGSFRLP

Intron Amino Acid Position:

786

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

77.8

30.2

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

71.9

0.49

67.1

42.5

Minor 5ss

34.2

-1.8

3.4

41.4

Minor BPS

0.58

1.6

81.93

39.6

Associated Gene:

Gene:

DIAPH2

Ensembl Gene ID:

ENSAPLG00000003882

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046828

5511287 - 5601134

89848

ENSAPLT00000034199

5511287 - 5601134

89848

ENSAPLT00000004091

5511287 - 5601134

89848