About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_569824_576199_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
569824 - 576199
Intron Length:
6376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
GTCATTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTGATAAGT
Flanking Amino Acid:
KCYEAGMTLGARKLKKLGNL
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.4
0.55
0.9
68.2
37.4
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
48.7
-0
2.5
80.09
42.1

Associated Gene:

Gene:
AR
Ensembl Gene ID:
ENSAPLG00000006566
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006826
555916 - 586082
30167