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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5810410_5826246_F

Intron Information:

Intron Rank:
125771
Intron Class:
major
Intron Phase:
Intron Coordinates:
5810410 - 5826246
Intron Length:
15837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGT
5'SS Class:
major
3'SS Sequence:
ACTCATTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCTTTGTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
63.4
43.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
72.9
0.52
0.9
69.6
35.8
Minor 5ss
37.5
-1.4
3.5
56.6
47.6
Minor BPS
46
-0.3
2.2
60.33
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017740
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032911
5809723 - 5827642
17920