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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5826306_5826894_F

Intron Information:

Intron Rank:
125772
Intron Class:
major
Intron Phase:
Intron Coordinates:
5826306 - 5826894
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAA
U12 Branch Point Sequence:
TTTGCCACCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
58.9
0.22
1
50.1
34.6
Major PPT
86.7
0.82
0.7
85.6
28.6
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
45.9
-0.2
2.3
72.93
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017740
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032911
5809723 - 5827642
17920