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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5826970_5827580_F

Intron Information:

Intron Rank:
125773
Intron Class:
major
Intron Phase:
Intron Coordinates:
5826970 - 5827580
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TAATTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTGCTTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.7
0.58
0.9
69.4
36.3
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
55.8
0.26
1.6
73.52
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017740
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032911
5809723 - 5827642
17920