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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5879449_5883985_F

Intron Information:

Intron Rank:
125999
Intron Class:
major
Intron Phase:
Intron Coordinates:
5879449 - 5883985
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATAGC
5'SS Class:
major
3'SS Sequence:
TTCATTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.3
38.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
0.8
73.4
35.7
Minor 5ss
35.6
-1.6
2.8
42.6
39.3
Minor BPS
65.6
0.49
1.8
80.59
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017879
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047010
5879299 - 5918200
38902