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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5884090_5915145_F

Intron Information:

Intron Rank:
126000
Intron Class:
major
Intron Phase:
Intron Coordinates:
5884090 - 5915145
Intron Length:
31056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
TTGTGCATACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
80.1
0.68
0.7
72.4
32.3
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
46.3
-0.2
2.2
63.66
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017879
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047010
5879299 - 5918200
38902