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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5915201_5918009_F

Intron Information:

Intron Rank:
126001
Intron Class:
major
Intron Phase:
Intron Coordinates:
5915201 - 5918009
Intron Length:
2809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAG
U12 Branch Point Sequence:
GTTTTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
49
-0
1.8
57.4
49.1
Major PPT
81.8
0.72
0.8
74.4
36.5
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017879
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047010
5879299 - 5918200
38902