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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5915201_5984085_F

Intron Information:

Intron Rank:
125998
Intron Class:
major
Intron Phase:
Intron Coordinates:
5915201 - 5984085
Intron Length:
68885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTATTTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.3
0.77
0.8
79.5
32.2
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
52.4
0.15
1.7
69.12
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017879
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017878
5915037 - 5984147
69111