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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_5987496_6007130_R

Intron Information:

Intron Rank:
144510
Intron Class:
major
Intron Phase:
Intron Coordinates:
5987496 - 6007130
Intron Length:
19635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CATGTTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATGATTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
74.3
0.55
1
68.9
41.6
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
55.5
0.25
1.6
70.82
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025046
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036344
5986948 - 6008148
21201