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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6007184_6008297_R

Intron Information:

Intron Rank:
144509
Intron Class:
major
Intron Phase:
Intron Coordinates:
6007184 - 6008297
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.9
0.85
0.7
83.3
25.1
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
68.5
0.58
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025046
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018558
6006397 - 6008560
2164