About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_608943_611462_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
608943 - 611462
Intron Length:
2520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGCG
5'SS Class:
major
3'SS Sequence:
TCTGCCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
ATCCTCTGAAAA
Flanking Amino Acid:
VEILIEHFGKIYSGPPEDSA
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.9
42.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
79.8
0.67
0.8
72.5
32.3
Minor 5ss
27.8
-2.5
3.7
38.6
46.6
Minor BPS
51.5
0.04
1.5
61.34
38.1

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000