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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_611623_613271_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
611623 - 613271
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
CTCCTGCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAAAAAATAATG
Flanking Amino Acid:
MLELLIRHLVNVCEHSRENL
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
71.7
40.1
Major BPS
76.8
0.67
1
66
40.9
Major PPT
71
0.47
0.8
64.1
31.2
Minor 5ss
40.5
-1.1
2.9
49
41.4
Minor BPS
41.5
-0.7
1.9
46.2
39.4

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000