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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_613378_615161_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
613378 - 615161
Intron Length:
1784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TACTTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTGTGTTACTT
Flanking Amino Acid:
KLHKELVLAAKSENLDYRLG
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.4
41.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
77.5
0.62
0.8
69.6
36.4
Minor 5ss
39.1
-1.2
3
57.4
40.4
Minor BPS
48.2
-0
2.3
74.4
43.5

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000