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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_615221_615538_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
615221 - 615538
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CTGGTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
CCTCGCAGAGCT
Flanking Amino Acid:
TITSSLKFYLRNLSEPVMTY
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
74.9
0.56
1
68.6
42
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
38.7
-0.7
2.1
55.18
46.2

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000