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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_615624_618003_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
615624 - 618003
Intron Length:
2380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTATTTTAAAG
Flanking Amino Acid:
QVQKLLNAFFDPKCPGDVDL
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86
0.81
0.8
77.9
36.6
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
56.9
0.08
1.5
60.51
41.6

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000