Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_618079_618768_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

618079 - 618768

Intron Length:

690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGTGC

5'SS Class:

strong_major

3'SS Sequence:

CTGTTGTGCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAC

U12 Branch Point Sequence:

ACGGCTCTAACT

Flanking Amino Acid:

RKCINAVETKGISTEGVYRT

Intron Amino Acid Position:

547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

37.3

Major BPS

72.3

0.55

73.3

28.9

Major PPT

66.1

0.36

65.1

41.2

Minor 5ss

31.6

-2.1

3.2

41.1

45.6

Minor BPS

0.11

1.8

66.37

44.6

Associated Gene:

Gene:

OPHN1

Ensembl Gene ID:

ENSAPLG00000006763

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007059

606686 - 656685

50000