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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_618832_620390_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
618832 - 620390
Intron Length:
1559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
CTTCTTTGAAAC
Flanking Amino Acid:
YHSPITKQEEMELNEVGFKF
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
72.6
0.51
1
69.7
39.6
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
50.1
-0
1.5
61.4
37.7

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000