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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6189671_6225381_R

Intron Information:

Intron Rank:
132007
Intron Class:
major
Intron Phase:
Intron Coordinates:
6189671 - 6225381
Intron Length:
35711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCTG
5'SS Class:
major
3'SS Sequence:
GGACTCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCTTCTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.3
63.6
48.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
67
0.38
1
58.1
38.3
Minor 5ss
36.9
-1.5
3.1
47.7
47.8
Minor BPS
54.3
-0
1.9
67.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018259
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042350
6089718 - 6226158
136441