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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_620425_621737_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
620425 - 621737
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
CCCCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCCAC
U12 Branch Point Sequence:
TCTTCCTCCACC
Flanking Amino Acid:
WMEAMDGKEPIYHSPITKQE
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.9
39.9
Major BPS
47
-0.1
1.3
55.7
39.5
Major PPT
84.8
0.78
0.7
82.9
25.6
Minor 5ss
39.6
-1.2
2.9
57.1
41.1
Minor BPS
61.1
0.33
2
74.56
42.5

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000