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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_621817_621949_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
621817 - 621949
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
AAACTCTGCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCAAAC
U12 Branch Point Sequence:
CCCGGGCAAACT
Flanking Amino Acid:
RFCFDIETNERSGTITLQAL
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
43.9
-0.3
1.2
44.7
36.8
Major PPT
55.8
0.13
1
47.4
40.4
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
30.7
-1.3
2.5
42.94
47.1

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000