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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_625449_626500_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
625449 - 626500
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTTCC
5'SS Class:
major
3'SS Sequence:
TTTCCCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCCCCCAACA
Flanking Amino Acid:
KQQLQLSLQNTRNHFSSTRE
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
69
36.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.5
0.57
0.8
70.6
28.9
Minor 5ss
42.8
-0.8
3
57.9
39.9
Minor BPS
60.7
0.33
1.9
78.63
37.1

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000