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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_62561_64442_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62561 - 64442
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTGTTTTTACCC
Flanking Amino Acid:
LQGSAWQIIADEIQWKDFPL
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.9
0.67
0.9
73.6
40.9
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
58.4
0.24
1.6
65.93
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046376
43241 - 79050
35810
ENSAPLT00000042455
59971 - 79050
19080
ENSAPLT00000035861
51759 - 78936
27178
ENSAPLT00000004009
51613 - 79050
27438